!,ldenseMatrix-method	ldenseMatrix-class
!,ldiMatrix-method	ldiMatrix-class
!,lsparseMatrix-method	lsparseMatrix-classes
!,ltpMatrix-method	ltrMatrix-class
!,ltrMatrix-method	ltrMatrix-class
%*%,CsparseMatrix,CsparseMatrix-method	CsparseMatrix-class
%*%,CsparseMatrix,denseMatrix-method	CsparseMatrix-class
%*%,ddenseMatrix,dsparseMatrix-method	dsparseMatrix-class
%*%,ddiMatrix,ddiMatrix-method	ddiMatrix-class
%*%,dgCMatrix,dgeMatrix-method	dgCMatrix-class
%*%,dgCMatrix,matrix-method	dgCMatrix-class
%*%,dgeMatrix,dgCMatrix-method	dgCMatrix-class
%*%,dgeMatrix,dgeMatrix-method	dgeMatrix-class
%*%,dgeMatrix,diagonalMatrix-method	diagonalMatrix-class
%*%,dgeMatrix,dsparseMatrix-method	dsparseMatrix-class
%*%,dgeMatrix,dsyMatrix-method	dsyMatrix-class
%*%,dgeMatrix,dtpMatrix-method	dtpMatrix-class
%*%,dgeMatrix,dtrMatrix-method	dtrMatrix-class
%*%,dgeMatrix,matrix-method	dgeMatrix-class
%*%,dgeMatrix,numeric-method	dgeMatrix-class
%*%,diagonalMatrix,dgeMatrix-method	diagonalMatrix-class
%*%,diagonalMatrix,matrix-method	diagonalMatrix-class
%*%,diagonalMatrix,sparseMatrix-method	diagonalMatrix-class
%*%,dMatrix,integer-method	dMatrix-class
%*%,dsparseMatrix,ddenseMatrix-method	dsparseMatrix-class
%*%,dsparseMatrix,dgeMatrix-method	dsparseMatrix-class
%*%,dspMatrix,dgeMatrix-method	dsyMatrix-class
%*%,dspMatrix,integer-method	dsyMatrix-class
%*%,dspMatrix,matrix-method	dsyMatrix-class
%*%,dspMatrix,numeric-method	dsyMatrix-class
%*%,dsyMatrix,dgeMatrix-method	dsyMatrix-class
%*%,dtpMatrix,dgeMatrix-method	dtpMatrix-class
%*%,dtpMatrix,dtpMatrix-method	dtpMatrix-class
%*%,dtpMatrix,matrix-method	dtpMatrix-class
%*%,dtpMatrix,numeric-method	dtpMatrix-class
%*%,dtrMatrix,dgeMatrix-method	dtrMatrix-class
%*%,dtrMatrix,dtrMatrix-method	dtrMatrix-class
%*%,dtrMatrix,matrix-method	dtrMatrix-class
%*%,integer,dMatrix-method	dMatrix-class
%*%,ldenseMatrix,lsparseMatrix-method	lsparseMatrix-classes
%*%,lgCMatrix,lgCMatrix-method	lsparseMatrix-classes
%*%,lsparseMatrix,ldenseMatrix-method	lsparseMatrix-classes
%*%,lsparseMatrix,lsparseMatrix-method	lsparseMatrix-classes
%*%,matrix,dgCMatrix-method	dgCMatrix-class
%*%,matrix,dgeMatrix-method	dgeMatrix-class
%*%,matrix,diagonalMatrix-method	diagonalMatrix-class
%*%,matrix,dtpMatrix-method	dtpMatrix-class
%*%,matrix,dtrMatrix-method	dtrMatrix-class
%*%,Matrix,Matrix-method	Matrix-class
%*%,Matrix,numeric-method	Matrix-class
%*%,Matrix,pMatrix-method	pMatrix-class
%*%,matrix,pMatrix-method	pMatrix-class
%*%,numeric,dgeMatrix-method	dgeMatrix-class
%*%,numeric,dtpMatrix-method	dtpMatrix-class
%*%,numeric,Matrix-method	Matrix-class
%*%,pMatrix,Matrix-method	pMatrix-class
%*%,pMatrix,matrix-method	pMatrix-class
%*%,pMatrix,pMatrix-method	pMatrix-class
%*%,sparseMatrix,diagonalMatrix-method	diagonalMatrix-class
+,dgTMatrix,dgTMatrix-method	dgTMatrix-class
+,Matrix,missing-method	Matrix-class
-,lsparseMatrix,missing-method	lsparseMatrix-classes
-,Matrix,missing-method	Matrix-class
-,pMatrix,missing-method	pMatrix-class
-,sparseMatrix,missing-method	sparseMatrix-class
anova,mer-method	lmer-class
Arith,dgCMatrix,dgCMatrix-method	dgCMatrix-class
Arith,dgCMatrix,numeric-method	dgCMatrix-class
Arith,dgeMatrix,dgeMatrix-method	dgeMatrix-class
Arith,dgeMatrix,numeric-method	dgeMatrix-class
Arith,dMatrix,dMatrix-method	dMatrix-class
Arith,dMatrix,numeric-method	dMatrix-class
Arith,dsparseMatrix,dsparseMatrix-method	dsparseMatrix-class
Arith,dsparseMatrix,numeric-method	dsparseMatrix-class
Arith,numeric,dgCMatrix-method	dgCMatrix-class
Arith,numeric,dgeMatrix-method	dgeMatrix-class
Arith,numeric,dMatrix-method	dMatrix-class
Arith,numeric,dsparseMatrix-method	dsparseMatrix-class
as.array,Matrix-method	Matrix-class
as.matrix,Matrix-method	Matrix-class
as.vector,dgeMatrix,missing-method	dgeMatrix-class
as.vector,ldenseMatrix,missing-method	ldenseMatrix-class
as.vector,lgeMatrix,missing-method	lgeMatrix-class
as.vector,Matrix,missing-method	Matrix-class
band	band
band,CsparseMatrix-method	band
band-methods	band
BIC	BIC
BIC,ANY-method	BIC
BIC,logLik-method	BIC
BunchKaufman-class	Cholesky-class
CAex	CAex
cbind2,ddenseMatrix,ddenseMatrix-method	ddenseMatrix-class
cbind2,ddenseMatrix,matrix-method	ddenseMatrix-class
cbind2,ddenseMatrix,numeric-method	ddenseMatrix-class
cbind2,dsparseMatrix,dsparseMatrix-method	dsparseMatrix-class
cbind2,dsparseMatrix,matrix-method	dsparseMatrix-class
cbind2,dsparseMatrix,numeric-method	dsparseMatrix-class
cbind2,matrix,ddenseMatrix-method	ddenseMatrix-class
cbind2,matrix,dsparseMatrix-method	dsparseMatrix-class
cbind2,Matrix,Matrix-method	Matrix-class
cbind2,Matrix,missing-method	Matrix-class
cbind2,Matrix,NULL-method	Matrix-class
cbind2,NULL,Matrix-method	Matrix-class
cbind2,numeric,ddenseMatrix-method	ddenseMatrix-class
cbind2,numeric,dsparseMatrix-method	dsparseMatrix-class
chol,dgeMatrix,ANY-method	dgeMatrix-class
chol,dpoMatrix,ANY-method	dpoMatrix-class
chol,dpoMatrix-method	dpoMatrix-class
chol,dppMatrix,ANY-method	dpoMatrix-class
chol,dppMatrix-method	dpoMatrix-class
chol,dsCMatrix,logical-method	dsCMatrix-class
chol,dsCMatrix,missing-method	dsCMatrix-class
chol,lmer,ANY-method	lmer-class
chol,lsCMatrix,logical-method	lsparseMatrix-classes
chol,lsCMatrix,missing-method	lsparseMatrix-classes
chol,pedigree-method	pedigree-class
Cholesky-class	Cholesky-class
coef,mer-method	lmer-class
coef.lmer-class	lmer-class
coerce,CsparseMatrix,denseMatrix-method	CsparseMatrix-class
coerce,CsparseMatrix,TsparseMatrix-method	CsparseMatrix-class
coerce,ddenseMatrix,matrix-method	ddenseMatrix-class
coerce,ddiMatrix,dgCMatrix-method	ddiMatrix-class
coerce,ddiMatrix,dgeMatrix-method	ddiMatrix-class
coerce,ddiMatrix,dgTMatrix-method	ddiMatrix-class
coerce,denseMatrix,CsparseMatrix-method	denseMatrix-class
coerce,denseMatrix,dsparseMatrix-method	dsparseMatrix-class
coerce,denseMatrix,TsparseMatrix-method	denseMatrix-class
coerce,dgCMatrix,dgBCMatrix-method	dgCMatrix-class
coerce,dgCMatrix,dgeMatrix-method	dgCMatrix-class
coerce,dgCMatrix,dgTMatrix-method	dgCMatrix-class
coerce,dgCMatrix,dsCMatrix-method	dgCMatrix-class
coerce,dgCMatrix,dtCMatrix-method	dgCMatrix-class
coerce,dgCMatrix,lgCMatrix-method	dgCMatrix-class
coerce,dgCMatrix,matrix-method	dgCMatrix-class
coerce,dgeMatrix,dgCMatrix-method	dgCMatrix-class
coerce,dgeMatrix,dgTMatrix-method	dgTMatrix-class
coerce,dgeMatrix,dpoMatrix-method	dpoMatrix-class
coerce,dgeMatrix,dppMatrix-method	dpoMatrix-class
coerce,dgeMatrix,dsCMatrix-method	dsCMatrix-class
coerce,dgeMatrix,dspMatrix-method	dsyMatrix-class
coerce,dgeMatrix,dsTMatrix-method	dsCMatrix-class
coerce,dgeMatrix,dsyMatrix-method	dsyMatrix-class
coerce,dgeMatrix,dtrMatrix-method	dtrMatrix-class
coerce,dgeMatrix,lgeMatrix-method	dgeMatrix-class
coerce,dgeMatrix,matrix-method	dgeMatrix-class
coerce,dgRMatrix,dgeMatrix-method	dgRMatrix-class
coerce,dgRMatrix,dgTMatrix-method	dgRMatrix-class
coerce,dgRMatrix,matrix-method	dgRMatrix-class
coerce,dgTMatrix,dgCMatrix-method	dgTMatrix-class
coerce,dgTMatrix,dgeMatrix-method	dgTMatrix-class
coerce,dgTMatrix,dsCMatrix-method	dgTMatrix-class
coerce,dgTMatrix,dsTMatrix-method	dgTMatrix-class
coerce,dgTMatrix,dtTMatrix-method	dgTMatrix-class
coerce,dgTMatrix,graphNEL-method	sparseMatrix-class
coerce,dgTMatrix,matrix-method	dgTMatrix-class
coerce,diagonalMatrix,generalMatrix-method	diagonalMatrix-class
coerce,diagonalMatrix,matrix-method	diagonalMatrix-class
coerce,diagonalMatrix,sparseMatrix-method	diagonalMatrix-class
coerce,diagonalMatrix,triangularMatrix-method	diagonalMatrix-class
coerce,dMatrix,dgeMatrix-method	dMatrix-class
coerce,dMatrix,matrix-method	dMatrix-class
coerce,dMatrix,sparseMatrix-method	dMatrix-class
coerce,dpoMatrix,correlation-method	dpoMatrix-class
coerce,dpoMatrix,dppMatrix-method	dpoMatrix-class
coerce,dppMatrix,dpoMatrix-method	dpoMatrix-class
coerce,dsCMatrix,dgCMatrix-method	dsCMatrix-class
coerce,dsCMatrix,dgeMatrix-method	dsCMatrix-class
coerce,dsCMatrix,dgTMatrix-method	dsCMatrix-class
coerce,dsCMatrix,dsTMatrix-method	dsCMatrix-class
coerce,dsCMatrix,dsyMatrix-method	dsCMatrix-class
coerce,dsCMatrix,lsCMatrix-method	dsCMatrix-class
coerce,dsCMatrix,matrix-method	dsCMatrix-class
coerce,dspMatrix,dgeMatrix-method	dsyMatrix-class
coerce,dspMatrix,dsyMatrix-method	dsyMatrix-class
coerce,dspMatrix,lspMatrix-method	dsyMatrix-class
coerce,dspMatrix,matrix-method	dsyMatrix-class
coerce,dsTMatrix,dgeMatrix-method	dsCMatrix-class
coerce,dsTMatrix,dgTMatrix-method	dsCMatrix-class
coerce,dsTMatrix,dsCMatrix-method	dsCMatrix-class
coerce,dsTMatrix,dsyMatrix-method	dsCMatrix-class
coerce,dsTMatrix,lsTMatrix-method	dsCMatrix-class
coerce,dsTMatrix,matrix-method	dsCMatrix-class
coerce,dsyMatrix,dgeMatrix-method	dsyMatrix-class
coerce,dsyMatrix,dsCMatrix-method	dsCMatrix-class
coerce,dsyMatrix,dspMatrix-method	dsyMatrix-class
coerce,dsyMatrix,dsTMatrix-method	dsCMatrix-class
coerce,dsyMatrix,lsyMatrix-method	dsyMatrix-class
coerce,dsyMatrix,matrix-method	dsyMatrix-class
coerce,dtCMatrix,dgCMatrix-method	dtCMatrix-class
coerce,dtCMatrix,dgeMatrix-method	dtCMatrix-class
coerce,dtCMatrix,dgTMatrix-method	dtCMatrix-class
coerce,dtCMatrix,dtrMatrix-method	dtCMatrix-class
coerce,dtCMatrix,dtTMatrix-method	dtCMatrix-class
coerce,dtCMatrix,ltCMatrix-method	dtCMatrix-class
coerce,dtCMatrix,TsparseMatrix-method	dtCMatrix-class
coerce,dtpMatrix,dgeMatrix-method	dtpMatrix-class
coerce,dtpMatrix,dtrMatrix-method	dtpMatrix-class
coerce,dtpMatrix,dtTMatrix-method	dtpMatrix-class
coerce,dtpMatrix,ltpMatrix-method	dtpMatrix-class
coerce,dtpMatrix,matrix-method	dtpMatrix-class
coerce,dtrMatrix,dgeMatrix-method	dtrMatrix-class
coerce,dtrMatrix,dtpMatrix-method	dtrMatrix-class
coerce,dtrMatrix,ltrMatrix-method	dtrMatrix-class
coerce,dtrMatrix,matrix-method	dtrMatrix-class
coerce,dtTMatrix,dgeMatrix-method	dtCMatrix-class
coerce,dtTMatrix,dgTMatrix-method	dtCMatrix-class
coerce,dtTMatrix,dtCMatrix-method	dtCMatrix-class
coerce,dtTMatrix,dtrMatrix-method	dtCMatrix-class
coerce,dtTMatrix,ltTMatrix-method	dtCMatrix-class
coerce,dtTMatrix,matrix-method	dtCMatrix-class
coerce,graph,sparseMatrix-method	sparseMatrix-class
coerce,graphAM,sparseMatrix-method	sparseMatrix-class
coerce,graphNEL,dsCMatrix-method	dsCMatrix-class
coerce,graphNEL,sparseMatrix-method	sparseMatrix-class
coerce,integer,pMatrix-method	pMatrix-class
coerce,ldenseMatrix,matrix-method	ldenseMatrix-class
coerce,ldiMatrix,lgCMatrix-method	ldiMatrix-class
coerce,ldiMatrix,lgTMatrix-method	ldiMatrix-class
coerce,lgCMatrix,dgCMatrix-method	lsparseMatrix-classes
coerce,lgCMatrix,lgeMatrix-method	lsparseMatrix-classes
coerce,lgCMatrix,lgTMatrix-method	lsparseMatrix-classes
coerce,lgCMatrix,matrix-method	lsparseMatrix-classes
coerce,lgeMatrix,dgeMatrix-method	lgeMatrix-class
coerce,lgeMatrix,lgCMatrix-method	lgeMatrix-class
coerce,lgeMatrix,lgTMatrix-method	lgeMatrix-class
coerce,lgeMatrix,lspMatrix-method	lgeMatrix-class
coerce,lgeMatrix,lsyMatrix-method	lgeMatrix-class
coerce,lgeMatrix,ltpMatrix-method	lgeMatrix-class
coerce,lgeMatrix,ltrMatrix-method	lgeMatrix-class
coerce,lgeMatrix,matrix-method	lgeMatrix-class
coerce,lgTMatrix,dgTMatrix-method	lsparseMatrix-classes
coerce,lgTMatrix,lgCMatrix-method	lsparseMatrix-classes
coerce,lgTMatrix,matrix-method	lsparseMatrix-classes
coerce,lmer,dsTMatrix-method	lmer-class
coerce,lsCMatrix,dgTMatrix-method	lsparseMatrix-classes
coerce,lsCMatrix,dsCMatrix-method	lsparseMatrix-classes
coerce,lsCMatrix,lgCMatrix-method	lsparseMatrix-classes
coerce,lsCMatrix,lsTMatrix-method	lsparseMatrix-classes
coerce,lsCMatrix,matrix-method	lsparseMatrix-classes
coerce,lspMatrix,dspMatrix-method	lsyMatrix-class
coerce,lspMatrix,lgeMatrix-method	lsyMatrix-class
coerce,lspMatrix,lsyMatrix-method	lsyMatrix-class
coerce,lsyMatrix,dsyMatrix-method	lsyMatrix-class
coerce,lsyMatrix,lgeMatrix-method	lsyMatrix-class
coerce,lsyMatrix,lspMatrix-method	lsyMatrix-class
coerce,ltCMatrix,dMatrix-method	lsparseMatrix-classes
coerce,ltCMatrix,dtCMatrix-method	lsparseMatrix-classes
coerce,ltCMatrix,lgCMatrix-method	lsparseMatrix-classes
coerce,ltCMatrix,matrix-method	lsparseMatrix-classes
coerce,ltpMatrix,dtpMatrix-method	ltrMatrix-class
coerce,ltpMatrix,lgeMatrix-method	ltrMatrix-class
coerce,ltpMatrix,ltrMatrix-method	ltrMatrix-class
coerce,ltrMatrix,dtrMatrix-method	ltrMatrix-class
coerce,ltrMatrix,lgeMatrix-method	ltrMatrix-class
coerce,ltrMatrix,ltpMatrix-method	ltrMatrix-class
coerce,ltTMatrix,dtTMatrix-method	lsparseMatrix-classes
coerce,ltTMatrix,lgTMatrix-method	lsparseMatrix-classes
coerce,ltTMatrix,matrix-method	lsparseMatrix-classes
coerce,matrix,dgCMatrix-method	dgCMatrix-class
coerce,matrix,dgeMatrix-method	dgeMatrix-class
coerce,matrix,dgRMatrix-method	dgRMatrix-class
coerce,matrix,dgTMatrix-method	dgTMatrix-class
coerce,Matrix,diagonalMatrix-method	diagonalMatrix-class
coerce,matrix,diagonalMatrix-method	diagonalMatrix-class
coerce,matrix,dpoMatrix-method	dpoMatrix-class
coerce,matrix,dppMatrix-method	dpoMatrix-class
coerce,matrix,dsCMatrix-method	dsCMatrix-class
coerce,matrix,dspMatrix-method	dsyMatrix-class
coerce,matrix,dsTMatrix-method	dsCMatrix-class
coerce,matrix,dsyMatrix-method	dsyMatrix-class
coerce,matrix,dtCMatrix-method	dtCMatrix-class
coerce,matrix,dtpMatrix-method	dtpMatrix-class
coerce,matrix,dtrMatrix-method	dtrMatrix-class
coerce,matrix,dtTMatrix-method	dtCMatrix-class
coerce,matrix,ldenseMatrix-method	ldenseMatrix-class
coerce,matrix,lgCMatrix-method	lsparseMatrix-classes
coerce,matrix,lgeMatrix-method	lgeMatrix-class
coerce,matrix,lgTMatrix-method	lsparseMatrix-classes
coerce,matrix,lspMatrix-method	lsyMatrix-class
coerce,matrix,lsyMatrix-method	lsyMatrix-class
coerce,matrix,ltCMatrix-method	lsparseMatrix-classes
coerce,matrix,ltpMatrix-method	ltrMatrix-class
coerce,matrix,ltrMatrix-method	ltrMatrix-class
coerce,mer,dtCMatrix-method	lmer-class
coerce,mer,pMatrix-method	lmer-class
coerce,pdIdent,corrmatrix-method	corrmatrix-class
coerce,pdMat,corrmatrix-method	corrmatrix-class
coerce,pdmatrix,corrmatrix-method	corrmatrix-class
coerce,pdNatural,corrmatrix-method	corrmatrix-class
coerce,pedigree,data.frame-method	pedigree-class
coerce,pedigree,dtCMatrix-method	pedigree-class
coerce,pMatrix,lgTMatrix-method	pMatrix-class
coerce,pMatrix,matrix-method	pMatrix-class
coerce,sparseMatrix,graph-method	sparseMatrix-class
coerce,sparseMatrix,graphNEL-method	sparseMatrix-class
coerce,TsparseMatrix,CsparseMatrix-method	TsparseMatrix-class
coerce,TsparseMatrix,graphNEL-method	sparseMatrix-class
coerce<-,pdNatural,corrmatrix-method	corrmatrix-class
colMeans,CsparseMatrix-method	CsparseMatrix-class
colMeans,denseMatrix-method	denseMatrix-class
colMeans,dgCMatrix-method	dgCMatrix-class
colMeans,dgeMatrix-method	dgeMatrix-class
colMeans,dgTMatrix-method	dgTMatrix-class
colMeans,sparseMatrix-method	sparseMatrix-class
colMeans,TsparseMatrix-method	TsparseMatrix-class
colSums,CsparseMatrix-method	CsparseMatrix-class
colSums,denseMatrix-method	denseMatrix-class
colSums,dgCMatrix-method	dgCMatrix-class
colSums,dgeMatrix-method	dgeMatrix-class
colSums,dgTMatrix-method	dgTMatrix-class
colSums,sparseMatrix-method	sparseMatrix-class
colSums,TsparseMatrix-method	TsparseMatrix-class
Compare,ANY,Matrix-method	Matrix-class
Compare,dMatrix,dMatrix-method	dMatrix-class
Compare,dMatrix,numeric-method	dMatrix-class
Compare,Matrix,ANY-method	Matrix-class
Compare,Matrix,Matrix-method	Matrix-class
Compare,numeric,dMatrix-method	dMatrix-class
compMatrix-class	compMatrix-class
confint,mer-method	lmer-class
correlation-class	dpoMatrix-class
corrmatrix-class	corrmatrix-class
crossprod,ANY,Matrix-method	Matrix-class
crossprod,CsparseMatrix,missing-method	CsparseMatrix-class
crossprod,ddenseMatrix,dsparseMatrix-method	dsparseMatrix-class
crossprod,ddenseMatrix,missing-method	ddenseMatrix-class
crossprod,ddiMatrix,ddiMatrix-method	ddiMatrix-class
crossprod,dgCMatrix,dgeMatrix-method	dgCMatrix-class
crossprod,dgCMatrix,matrix-method	dgCMatrix-class
crossprod,dgCMatrix,missing-method	dgCMatrix-class
crossprod,dgeMatrix,dgeMatrix-method	dgeMatrix-class
crossprod,dgeMatrix,dsparseMatrix-method	dsparseMatrix-class
crossprod,dgeMatrix,matrix-method	dgeMatrix-class
crossprod,dgeMatrix,missing-method	dgeMatrix-class
crossprod,dgeMatrix,numeric-method	dgeMatrix-class
crossprod,dgTMatrix,matrix-method	dgTMatrix-class
crossprod,dgTMatrix,missing-method	dgTMatrix-class
crossprod,dgTMatrix,numeric-method	dgTMatrix-class
crossprod,diagonalMatrix,dgeMatrix-method	diagonalMatrix-class
crossprod,diagonalMatrix,matrix-method	diagonalMatrix-class
crossprod,diagonalMatrix,sparseMatrix-method	diagonalMatrix-class
crossprod,dMatrix,integer-method	dMatrix-class
crossprod,dsparseMatrix,ddenseMatrix-method	dsparseMatrix-class
crossprod,dsparseMatrix,dgeMatrix-method	dsparseMatrix-class
crossprod,dtrMatrix,missing-method	dtrMatrix-class
crossprod,integer,dMatrix-method	dMatrix-class
crossprod,ldenseMatrix,lsparseMatrix-method	lsparseMatrix-classes
crossprod,lgCMatrix,missing-method	lsparseMatrix-classes
crossprod,lgTMatrix,missing-method	lsparseMatrix-classes
crossprod,lsparseMatrix,ldenseMatrix-method	lsparseMatrix-classes
crossprod,lsparseMatrix,lsparseMatrix-method	lsparseMatrix-classes
crossprod,lsparseMatrix,missing-method	lsparseMatrix-classes
crossprod,lsparseMatrix-method	lsparseMatrix-classes
crossprod,Matrix,ANY-method	Matrix-class
crossprod,matrix,dgeMatrix-method	dgeMatrix-class
crossprod,Matrix,numeric-method	Matrix-class
crossprod,numeric,dgeMatrix-method	dgeMatrix-class
crossprod,numeric,Matrix-method	Matrix-class
crossprod,sparseMatrix,diagonalMatrix-method	diagonalMatrix-class
crossprod,TsparseMatrix,missing-method	TsparseMatrix-class
CsparseMatrix-class	CsparseMatrix-class
dCHMsimpl-class	CHMfactor-class
dCHMsuper-class	CHMfactor-class
dCholCMatrix-class	dCholCMatrix-class
ddenseMatrix-class	ddenseMatrix-class
ddiMatrix-class	ddiMatrix-class
denseMatrix-class	denseMatrix-class
determinant,ddenseMatrix,logical-method	ddenseMatrix-class
determinant,ddenseMatrix,missing-method	ddenseMatrix-class
determinant,dgeMatrix,logical-method	dgeMatrix-class
determinant,dgeMatrix,missing-method	dgeMatrix-class
determinant,dpoMatrix,logical-method	dpoMatrix-class
determinant,dppMatrix,logical-method	dpoMatrix-class
determinant,dsCMatrix,logical-method	dsCMatrix-class
determinant,dsCMatrix,missing-method	dsCMatrix-class
determinant,dtpMatrix,logical-method	dtpMatrix-class
determinant,dtpMatrix,missing-method	dtpMatrix-class
determinant,dtrMatrix,logical-method	dtrMatrix-class
determinant,dtrMatrix,missing-method	dtrMatrix-class
deviance,mer-method	lmer-class
deviance,summary.mer-method	lmer-class
dgCMatrix-class	dgCMatrix-class
dgeMatrix-class	dgeMatrix-class
dgRMatrix-class	dgRMatrix-class
dgTMatrix-class	dgTMatrix-class
diag,ddenseMatrix-method	ddenseMatrix-class
diag,dgCMatrix-method	dgCMatrix-class
diag,dgeMatrix-method	dgeMatrix-class
diag,dgRMatrix-method	dgRMatrix-class
diag,diagonalMatrix-method	diagonalMatrix-class
diag,dtpMatrix-method	dtpMatrix-class
Diagonal	Diagonal
diagonalMatrix-class	diagonalMatrix-class
dim,dgCMatrix-method	dgCMatrix-class
dim,dgeMatrix-method	dgeMatrix-class
dim,dgRMatrix-method	dgRMatrix-class
dim,Matrix-method	Matrix-class
dimnames,dgeMatrix-method	dgeMatrix-class
dimnames,Matrix-method	Matrix-class
dimnames<-,dgeMatrix,list-method	dgeMatrix-class
dimnames<-,Matrix,list-method	Matrix-class
dMatrix-class	dMatrix-class
dpoMatrix-class	dpoMatrix-class
dppMatrix-class	dpoMatrix-class
dsCMatrix-class	dsCMatrix-class
dsparseMatrix-class	dsparseMatrix-class
dspMatrix-class	dsyMatrix-class
dsRMatrix-class	dsRMatrix-class
dsTMatrix-class	dsCMatrix-class
dsyMatrix-class	dsyMatrix-class
dtCMatrix-class	dtCMatrix-class
dtpMatrix-class	dtpMatrix-class
dtRMatrix-class	dtRMatrix-class-def
dtrMatrix-class	dtrMatrix-class
dtTMatrix-class	dtCMatrix-class
eigen,dgeMatrix,logical-method	dgeMatrix-class
eigen,dgeMatrix,missing-method	dgeMatrix-class
expand	expand
expand,LU-method	LU-class
expm	expm
expm,dgeMatrix-method	expm
expm,dMatrix-method	expm
facmul	facmul
facmul.default	facmul
fitted,mer-method	lmer-class
fixed.effects	fixef
fixef	fixef
fixef,ANY-method	fixef
fixef,glmer-method	fixef
fixef,mer-method	fixef
formula,mer-method	lmer-class
gamma,dgCMatrix-method	dgCMatrix-class
gamma,dMatrix-method	dMatrix-class
generalMatrix-class	generalMatrix-class
head,pedigree-method	pedigree-class
Hilbert	Hilbert
image,dgCMatrix-method	dgCMatrix-class
image,dgRMatrix-method	dgRMatrix-class
image,dgTMatrix-method	dgTMatrix-class
image,dsCMatrix-method	dsCMatrix-class
image,dsparseMatrix-method	dsparseMatrix-class
image,lgCMatrix-method	lsparseMatrix-classes
image,lsCMatrix-method	lsparseMatrix-classes
image,ltCMatrix-method	lsparseMatrix-classes
image,ltTMatrix-method	lsparseMatrix-classes
iMatrix-class	unused-classes
index-class	index-class
KNex	KNex
kronecker,ANY,Matrix-method	Matrix-class
kronecker,dgTMatrix,dgTMatrix-method	dgTMatrix-class
kronecker,dsparseMatrix,dsparseMatrix-method	dsparseMatrix-class
kronecker,Matrix,ANY-method	Matrix-class
lCHMsimpl-class	CHMfactor-class
lCHMsuper-class	CHMfactor-class
lCholCMatrix-class	dCholCMatrix-class
ldenseMatrix-class	ldenseMatrix-class
ldiMatrix-class	ldiMatrix-class
lgamma,dgCMatrix-method	dgCMatrix-class
lgamma,dMatrix-method	dMatrix-class
lgCMatrix-class	lsparseMatrix-classes
lgeMatrix-class	lgeMatrix-class
lgRMatrix-class	lsparseMatrix-classes
lgTMatrix-class	lsparseMatrix-classes
lMatrix-class	dMatrix-class
lmer	lmer
lmer,formula-method	lmer
lmer-class	lmer-class
log,dgCMatrix-method	dgCMatrix-class
log,dMatrix-method	dMatrix-class
logLik,mer-method	lmer-class
logLik,summary.mer-method	lmer-class
lsCMatrix-class	lsparseMatrix-classes
lsparseMatrix-class	lsparseMatrix-classes
lspMatrix-class	lsyMatrix-class
lsRMatrix-class	lsparseMatrix-classes
lsTMatrix-class	lsparseMatrix-classes
lsyMatrix-class	lsyMatrix-class
ltCMatrix-class	lsparseMatrix-classes
ltpMatrix-class	ltrMatrix-class
ltRMatrix-class	lsparseMatrix-classes
ltrMatrix-class	ltrMatrix-class
ltTMatrix-class	lsparseMatrix-classes
lu	lu
lu,ddenseMatrix-method	ddenseMatrix-class
lu,dgeMatrix-method	dgeMatrix-class
LU-class	LU-class
Math,dgCMatrix-method	dgCMatrix-class
Math,dgeMatrix-method	dgeMatrix-class
Math,dMatrix-method	dMatrix-class
Math,dsparseMatrix-method	dsparseMatrix-class
Math2,dMatrix,numeric-method	dMatrix-class
Matrix	Matrix
Matrix-class	Matrix-class
mcmcsamp	mcmcsamp
mcmcsamp,mer-method	mcmcsamp
mer-class	lmer-class
norm	norm
norm,ddenseMatrix,character-method	ddenseMatrix-class
norm,ddenseMatrix,missing-method	ddenseMatrix-class
norm,dgeMatrix,character-method	dgeMatrix-class
norm,dgeMatrix,missing-method	dgeMatrix-class
norm,dspMatrix,character-method	dsyMatrix-class
norm,dspMatrix,missing-method	dsyMatrix-class
norm,dsyMatrix,character-method	dsyMatrix-class
norm,dsyMatrix,missing-method	dsyMatrix-class
norm,dtpMatrix,character-method	dtpMatrix-class
norm,dtpMatrix,missing-method	dtpMatrix-class
norm,dtrMatrix,character-method	dtrMatrix-class
norm,dtrMatrix,missing-method	dtrMatrix-class
pBunchKaufman-class	Cholesky-class
pCholesky-class	Cholesky-class
pedigree	pedigree
pedigree-class	pedigree-class
plot,coef.lmer-method	lmer-class
plot,ranef.lmer-method	lmer-class
pMatrix-class	pMatrix-class
qqmath,ranef.lmer-method	lmer-class
random.effects	ranef
ranef	ranef
ranef,ANY-method	ranef
ranef,lmer-method	ranef
ranef,mer-method	ranef
ranef-methods	ranef
ranef.lmer-class	lmer-class
rbind2,ddenseMatrix,ddenseMatrix-method	ddenseMatrix-class
rbind2,ddenseMatrix,matrix-method	ddenseMatrix-class
rbind2,ddenseMatrix,numeric-method	ddenseMatrix-class
rbind2,dsparseMatrix,dsparseMatrix-method	dsparseMatrix-class
rbind2,dsparseMatrix,matrix-method	dsparseMatrix-class
rbind2,dsparseMatrix,numeric-method	dsparseMatrix-class
rbind2,matrix,ddenseMatrix-method	ddenseMatrix-class
rbind2,matrix,dsparseMatrix-method	dsparseMatrix-class
rbind2,Matrix,Matrix-method	Matrix-class
rbind2,Matrix,missing-method	Matrix-class
rbind2,Matrix,NULL-method	Matrix-class
rbind2,NULL,Matrix-method	Matrix-class
rbind2,numeric,ddenseMatrix-method	ddenseMatrix-class
rbind2,numeric,dsparseMatrix-method	dsparseMatrix-class
rcond	rcond
rcond,ddenseMatrix,character-method	ddenseMatrix-class
rcond,ddenseMatrix,missing-method	ddenseMatrix-class
rcond,dgeMatrix,character-method	dgeMatrix-class
rcond,dgeMatrix,missing-method	dgeMatrix-class
rcond,dpoMatrix,character-method	dpoMatrix-class
rcond,dpoMatrix,missing-method	dpoMatrix-class
rcond,dppMatrix,character-method	dpoMatrix-class
rcond,dppMatrix,missing-method	dpoMatrix-class
rcond,dspMatrix,character-method	dsyMatrix-class
rcond,dspMatrix,missing-method	dsyMatrix-class
rcond,dsyMatrix,character-method	dsyMatrix-class
rcond,dsyMatrix,missing-method	dsyMatrix-class
rcond,dtpMatrix,character-method	dtpMatrix-class
rcond,dtpMatrix,missing-method	dtpMatrix-class
rcond,dtrMatrix,character-method	dtrMatrix-class
rcond,dtrMatrix,missing-method	dtrMatrix-class
readHB	externalFormats
readMM	externalFormats
resid,mer-method	lmer-class
residuals,mer-method	lmer-class
round,dgCMatrix,numeric-method	dgCMatrix-class
round,dMatrix,numeric-method	dMatrix-class
rowMeans,CsparseMatrix-method	CsparseMatrix-class
rowMeans,denseMatrix-method	denseMatrix-class
rowMeans,dgCMatrix-method	dgCMatrix-class
rowMeans,dgeMatrix-method	dgeMatrix-class
rowMeans,dgTMatrix-method	dgTMatrix-class
rowMeans,sparseMatrix-method	sparseMatrix-class
rowMeans,TsparseMatrix-method	TsparseMatrix-class
rowSums,CsparseMatrix-method	CsparseMatrix-class
rowSums,denseMatrix-method	denseMatrix-class
rowSums,dgCMatrix-method	dgCMatrix-class
rowSums,dgeMatrix-method	dgeMatrix-class
rowSums,dgTMatrix-method	dgTMatrix-class
rowSums,sparseMatrix-method	sparseMatrix-class
rowSums,TsparseMatrix-method	TsparseMatrix-class
RsparseMatrix-class	RsparseMatrix-class
Schur	Schur
Schur,ddenseMatrix,logical-method	Schur
Schur,ddenseMatrix,missing-method	Schur
Schur,dgeMatrix,logical-method	Schur
Schur,dgeMatrix,missing-method	Schur
show,ddenseMatrix-method	ddenseMatrix-class
show,denseMatrix-method	denseMatrix-class
show,diagonalMatrix-method	diagonalMatrix-class
show,dMatrix-method	dMatrix-class
show,dsyMatrix-method	dsyMatrix-class
show,dtrMatrix-method	dtrMatrix-class
show,Matrix-method	Matrix-class
show,mer-method	lmer-class
show,pedigree-method	pedigree-class
show,sparseMatrix-method	sparseMatrix-class
show,VarCorr-method	VarCorr-class
signif,dgCMatrix,numeric-method	dgCMatrix-class
signif,dMatrix,numeric-method	dMatrix-class
simulate,mer-method	lmer-class
sleepstudy	sleepstudy
solve,ddenseMatrix,ANY-method	ddenseMatrix-class
solve,ddenseMatrix,missing-method	ddenseMatrix-class
solve,dgeMatrix,dgeMatrix-method	dgeMatrix-class
solve,dgeMatrix,matrix-method	dgeMatrix-class
solve,dgeMatrix,missing-method	dgeMatrix-class
solve,dgeMatrix,numeric-method	dgeMatrix-class
solve,dMatrix,integer-method	dMatrix-class
solve,dpoMatrix,dgeMatrix-method	dpoMatrix-class
solve,dpoMatrix,matrix-method	dpoMatrix-class
solve,dpoMatrix,missing-method	dpoMatrix-class
solve,dpoMatrix,numeric-method	dpoMatrix-class
solve,dppMatrix,dgeMatrix-method	dpoMatrix-class
solve,dppMatrix,integer-method	dpoMatrix-class
solve,dppMatrix,matrix-method	dpoMatrix-class
solve,dppMatrix,missing-method	dpoMatrix-class
solve,dppMatrix,numeric-method	dpoMatrix-class
solve,dsCMatrix,dgeMatrix-method	dsCMatrix-class
solve,dsCMatrix,matrix-method	dsCMatrix-class
solve,dspMatrix,dgeMatrix-method	dsyMatrix-class
solve,dspMatrix,integer-method	dsyMatrix-class
solve,dspMatrix,matrix-method	dsyMatrix-class
solve,dspMatrix,missing-method	dsyMatrix-class
solve,dspMatrix,numeric-method	dsyMatrix-class
solve,dsyMatrix,dgeMatrix-method	dsyMatrix-class
solve,dsyMatrix,matrix-method	dsyMatrix-class
solve,dsyMatrix,missing-method	dsyMatrix-class
solve,dtCMatrix,dgeMatrix-method	dtCMatrix-class
solve,dtCMatrix,matrix-method	dtCMatrix-class
solve,dtCMatrix,missing-method	dtCMatrix-class
solve,dtCMatrix,numeric-method	dtCMatrix-class
solve,dtpMatrix,matrix-method	dtpMatrix-class
solve,dtpMatrix,missing-method	dtpMatrix-class
solve,dtrMatrix,dgeMatrix-method	dtrMatrix-class
solve,dtrMatrix,matrix-method	dtrMatrix-class
solve,dtrMatrix,missing-method	dtrMatrix-class
solve,lCholCMatrix,lgCMatrix-method	dCholCMatrix-class
solve,lCholCMatrix,missing-method	dCholCMatrix-class
solve,Matrix,numeric-method	Matrix-class
solve,pMatrix,missing-method	pMatrix-class
sparseMatrix-class	sparseMatrix-class
Subassign-methods}% <- nicer to use in \link{.	Subassign-methods
Summary,dMatrix-method	dMatrix-class
summary,mer-method	lmer-class
summary,summary.mer-method	lmer-class
summary.lmer-class	lmer-class
summary.mer-class	lmer-class
symmetricMatrix-class	symmetricMatrix-class
t,CsparseMatrix-method	CsparseMatrix-class
t,ddenseMatrix-method	ddenseMatrix-class
t,dgCMatrix-method	dgCMatrix-class
t,dgeMatrix-method	dgeMatrix-class
t,dgRMatrix-method	dgRMatrix-class
t,dgTMatrix-method	dgTMatrix-class
t,diagonalMatrix-method	diagonalMatrix-class
t,dppMatrix-method	dpoMatrix-class
t,dsCMatrix-method	dsCMatrix-class
t,dspMatrix-method	dsyMatrix-class
t,dsTMatrix-method	dsCMatrix-class
t,dsyMatrix-method	dsyMatrix-class
t,dtCMatrix-method	dtCMatrix-class
t,dtpMatrix-method	dtpMatrix-class
t,dtrMatrix-method	dtrMatrix-class
t,dtTMatrix-method	dtCMatrix-class
t,lCholCMatrix-method	dCholCMatrix-class
t,lgCMatrix-method	lsparseMatrix-classes
t,lgeMatrix-method	lgeMatrix-class
t,lgTMatrix-method	lsparseMatrix-classes
t,lsCMatrix-method	lsparseMatrix-classes
t,lspMatrix-method	lsyMatrix-class
t,lsyMatrix-method	lsyMatrix-class
t,ltCMatrix-method	lsparseMatrix-classes
t,ltpMatrix-method	ltrMatrix-class
t,ltrMatrix-method	ltrMatrix-class
t,Matrix-method	Matrix-class
t,pMatrix-method	pMatrix-class
tail,pedigree-method	pedigree-class
tcrossprod	tcrossprod
tcrossprod,CsparseMatrix,missing-method	CsparseMatrix-class
tcrossprod,ddenseMatrix,missing-method	ddenseMatrix-class
tcrossprod,ddiMatrix,ddiMatrix-method	ddiMatrix-class
tcrossprod,dgCMatrix,missing-method	tcrossprod
tcrossprod,dgeMatrix,dgeMatrix-method	dgeMatrix-class
tcrossprod,dgeMatrix,matrix-method	dgeMatrix-class
tcrossprod,dgeMatrix,missing-method	dgeMatrix-class
tcrossprod,dgeMatrix,numeric-method	dgeMatrix-class
tcrossprod,dgTMatrix,missing-method	tcrossprod
tcrossprod,diagonalMatrix,sparseMatrix-method	diagonalMatrix-class
tcrossprod,lgCMatrix,missing-method	lsparseMatrix-classes
tcrossprod,lgTMatrix,missing-method	lsparseMatrix-classes
tcrossprod,lsparseMatrix,missing-method	lsparseMatrix-classes
tcrossprod,matrix,dgeMatrix-method	dgeMatrix-class
tcrossprod,matrix,missing-method	tcrossprod
tcrossprod,numeric,dgeMatrix-method	dgeMatrix-class
tcrossprod,numeric,missing-method	tcrossprod
tcrossprod,sparseMatrix,diagonalMatrix-method	diagonalMatrix-class
tcrossprod,TsparseMatrix,missing-method	TsparseMatrix-class
tcrossprod-methods	tcrossprod
terms,lmer-method	lmer-class
triangularMatrix-class	triangularMatrix-class
tril	band
tril,CsparseMatrix-method	band
tril-methods	band
triu	band
triu,CsparseMatrix-method	band
triu-methods	band
TsparseMatrix-class	TsparseMatrix-class
unname,Matrix-method	Matrix-class
unpack	unpack
unpack,dspMatrix-method	dsyMatrix-class
unpack,dtpMatrix-method	dtpMatrix-class
update,mer-method	lmer-class
VarCorr	VarCorr
VarCorr,mer-method	VarCorr
VarCorr-class	VarCorr-class
vcov,mer-method	lmer-class
vcov,summary.mer-method	lmer-class
with,lmer-method	lmer-class
writeHB	externalFormats
writeHB,dgCMatrix-method	externalFormats
writeHB,dgTMatrix-method	externalFormats
writeHB,dsCMatrix-method	externalFormats
writeHB,dsTMatrix-method	externalFormats
writeMM	externalFormats
writeMM,dgCMatrix-method	externalFormats
writeMM,dgTMatrix-method	externalFormats
writeMM,dsCMatrix-method	externalFormats
writeMM,dsTMatrix-method	externalFormats
zMatrix-class	unused-classes
[,denseMatrix,index,index,logical-method	Xtrct-methods
[,denseMatrix,index,missing,logical-method	Xtrct-methods
[,denseMatrix,missing,index,logical-method	Xtrct-methods
[,dMatrix,lMatrix,missing,ANY-method	dMatrix-class
[,dMatrix,logical,missing,ANY-method	dMatrix-class
[,Matrix,ANY,ANY,ANY-method	Xtrct-methods
[,Matrix,index,index,missing-method	Xtrct-methods
[,Matrix,index,missing,missing-method	Xtrct-methods
[,Matrix,lMatrix,missing,ANY-method	Matrix-class
[,Matrix,logical,missing,ANY-method	Matrix-class
[,Matrix,missing,index,missing-method	Xtrct-methods
[,Matrix,missing,missing,ANY-method	Xtrct-methods
[,sparseMatrix,index,index,logical-method	Xtrct-methods
[,sparseMatrix,index,missing,logical-method	Xtrct-methods
[,sparseMatrix,missing,index,logical-method	Xtrct-methods
[,TsparseMatrix,index,index,logical-method	Xtrct-methods
[,TsparseMatrix,index,missing,logical-method	Xtrct-methods
[,TsparseMatrix,missing,index,logical-method	Xtrct-methods
[-methods	Xtrct-methods
[<-,denseMatrix,index,index,numeric-method	Subassign-methods
[<-,denseMatrix,index,missing,numeric-method	Subassign-methods
[<-,denseMatrix,missing,index,numeric-method	Subassign-methods
[<-,dgCMatrix,index,index,numeric-method	Subassign-methods
[<-,dgCMatrix,index,missing,numeric-method	Subassign-methods
[<-,dgCMatrix,missing,index,numeric-method	Subassign-methods
[<-,dgTMatrix,index,index,numeric-method	Subassign-methods
[<-,dgTMatrix,index,missing,numeric-method	Subassign-methods
[<-,dgTMatrix,missing,index,numeric-method	Subassign-methods
[<-,Matrix,ANY,ANY,ANY-method	Subassign-methods
[<-,Matrix,missing,missing,ANY-method	Subassign-methods
[<--methods	Subassign-methods
